PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 360aa    MW: 40229.3 Da    PI: 9.9467
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0017genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.6e-1073114445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gh_D13G0017  73 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 114
                  6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.0E-864117No hitNo description
SMARTSM003384.6E-970133IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.41572116IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-774117No hitNo description
PfamPF001705.5E-774114IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
PfamPF141442.4E-31157231IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGHRLNTTKR SCQILYLISW SGELGGSSMA DASPRTDTST DDTDEKNQRF GRGQMNAIVA  60
SDSSDRSKDK TDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ  120
GIFISSSGDQ SHSMSGNGAL AFDVEYARWL EEHNRKINEL RTAVNSHAGD AELRIIVDSV  180
TTHFDDIFRL KGTAAKADVF HILSGMWKTP AERCFLWIGG FRSSELLKLL ANQLEPLTEQ  240
QFMGIQKLQQ SSQQAEDSLS QGMEALQQSL AETLANGSPS APSGSSGNVA NYMGQMAMAM  300
GKLGTLEGFL LQADNLRQQT LQQMHRILTT RQSARALLAI NDYFSRLRAL SSLWLARPRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.90970.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463272.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463270.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463269.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463268.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D2V7F40.0A0A0D2V7F4_G
STRINGVIT_13s0084g00660.t010.0(Vitis vinifera)
STRINGGLYMA15G37220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-133bZIP family protein